PROJECT INFORMATION
GOLD Project ID
Gp0004777  
Project Name
Cyclobacterium marinum Raj, DSM 745  
Other Names
  
Legacy ER Project ID
14514  
Legacy GOLD ID
Gi04013, Gc01913  
NCBI BioProject Name Cyclobacterium marinum DSM 745
NCBI BioProject ID 51773
NCBI BioProject Accession PRJNA51773
NCBI Locus Tag
Cycma  
NCBI BioSample Accession SAMN02261369
PI Jonathan Eisen
Added By Nikos Kyrpides on 2009-01-25
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance Tree of Life
GEBA
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency U.S. Department of Energy (DOE) (USA)
Leibniz Institute (Germany)
Project Description
Cyclobacterium marinum DSM 745 genome sequencing project  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Organism Cyclobacterium marinum Raj, DSM 745
Analysis Projects Cyclobacterium marinum Raj, DSM 745
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX Titanium
Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
38  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0004777
Organism Name
Cyclobacterium marinum Raj, DSM 745  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Cyclobacterium  
Genus Synonyms
  
Species
Cyclobacterium marinum  
Subspecies
  
Species Synonyms
  
Strain
DSM 745  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 745  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.8299  
Exemplar Name
Cyclobacterium marinum  
Taxon DOI
10.1601/tx.8269  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 880070
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Cytophagia  
NCBI Order
Cytophagales  
NCBI Family
Cyclobacteriaceae  
NCBI Genus
Cyclobacterium  
NCBI Species
Cyclobacterium marinum  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Fish  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AY533665
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
Poronotus triacanthus  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Marine
Host
Fish
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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