PROJECT INFORMATION
GOLD Project ID
Gp0044077  
Project Name
Crocinitomix catalasitica ATCC 23190  
Other Names
  
Legacy ER Project ID
51618  
Legacy GOLD ID
Gpto33529, Gi0051618  
NCBI BioProject Name Crocinitomix catalasitica ATCC 23190
NCBI BioProject ID 223059
NCBI BioProject Accession PRJNA223059
NCBI Locus Tag
T367  
NCBI BioSample Accession SAMN02744008
PI Nikos Kyrpides
Added By JGI automated process on 2013-07-26
Last Modified By JGI automated process on 2019-04-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Tree of Life
GEBA-KMG
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1753470
Experiment Title Crocinitomix catalasitica ATCC 23190
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OZCS
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project
Organism Crocinitomix catalasitica ATCC 23190
Analysis Projects Crocinitomix catalasitica ATCC 23190
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
34  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0044077
Organism Name
Crocinitomix catalasitica ATCC 23190  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Crocinitomix  
Genus Synonyms
  
Species
Crocinitomix catalasitica  
Subspecies
  
Species Synonyms
  
Strain
ATCC 23190  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 23190  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.8219  
Exemplar Name
Crocinitomix catalasitica  
Taxon DOI
10.1601/tx.8219  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1408433
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Flavobacteriia  
NCBI Order
Flavobacteriales  
NCBI Family
Crocinitomicaceae  
NCBI Genus
Crocinitomix  
NCBI Species
Crocinitomix catalasitica  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Intertidal zone  
Specific Ecosystem
Beach  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Sea sand
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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