PROJECT INFORMATION
GOLD Project ID
Gp0004362  
Project Name
Saprospira grandis HR1, DSM 2844  
Other Names
  
Legacy ER Project ID
292  
Legacy GOLD ID
Gi03955  
NCBI BioProject Name Saprospira grandis DSM 2844
NCBI BioProject ID 61003
NCBI BioProject Accession PRJNA61003
NCBI Locus Tag
Sapgr  
NCBI BioSample Accession SAMN02261388
PI Jonathan Eisen
Added By Nikos Kyrpides on 2009-01-18
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Tree of Life
GEBA
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency U.S. Department of Energy (DOE) (USA)
Leibniz Institute (Germany)
Project Description
Saprospira grandis DSM 2844 genome sequencing project  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Standards in genomic sciences 6(2):210-9 Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1).

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Organism Saprospira grandis HR1, DSM 2844
Analysis Projects Saprospira grandis HR1, DSM 2844
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX Titanium
Illumina HiSeq 2000
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
46  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0004362
Organism Name
Saprospira grandis HR1, DSM 2844  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Saprospira  
Genus Synonyms
  
Species
Saprospira grandis  
Subspecies
  
Species Synonyms
  
Strain
HR1, DSM 2844  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 2844  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 694433
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Saprospiria  
NCBI Order
Saprospirales  
NCBI Family
Saprospiraceae  
NCBI Genus
Saprospira  
NCBI Species
Saprospira grandis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Arthropoda  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Obligate aerobe  
Cell Shape
Helical-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
25-30C  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Marine
Metabolisms
  
Phenotypes
  
Energy Sources Chemoorganotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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