PROJECT INFORMATION
GOLD Project ID
Gp0042640  
Project Name
Methanobacterium arcticum M2, DSM 19844  
Other Names
  
Legacy ER Project ID
49217  
Legacy GOLD ID
Gi0049217  
NCBI BioProject Name Methanobacterium arcticum strain:M2
NCBI BioProject ID 245621
NCBI BioProject Accession PRJNA245621
NCBI Locus Tag
EI99  
NCBI BioSample Accession SAMN02910397
PI Hinsby Cadillo-Quiroz
Added By JGI automated process on 2013-05-23
Last Modified By JGI automated process on 2018-10-08
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genomic biology of novel permafrost methanogens: Methanobacterium veterum and M. arcticum  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2050966
Experiment Title Methanobacterium arcticum M2
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name XOXY
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study Genomic biology of novel permafrost methanogens: Methanobacterium veterum and M. arcticum
Organism Methanobacterium arcticum M2, DSM 19844
Analysis Projects Methanobacterium arcticum M2, DSM 19844
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Illumina MiSeq
Illumina HiSeq 2500
Illumina HiSeq 2000
PacBio RS II
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes; PacBio >10kb w/ AMPure Bead Size Selection, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0042640
Organism Name
Methanobacterium arcticum M2, DSM 19844  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-METHANOBACTERIA  
Genus
Methanobacterium  
Genus Synonyms
  
Species
Methanobacterium arcticum  
Subspecies
  
Species Synonyms
  
Strain
M2  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 19844  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.20341  
Exemplar Name
Methanobacterium arcticum  
Taxon DOI
10.1601/tx.20341  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 386456
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Methanobacteria  
NCBI Order
Methanobacteriales  
NCBI Family
Methanobacteriaceae  
NCBI Genus
Methanobacterium  
NCBI Species
Methanobacterium arcticum  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Permafrost  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID DQ517520
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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