PROJECT INFORMATION
GOLD Project ID
Gp0004209  
Project Name
Gammaproteobacteria sp. OM60 HIMB55  
Other Names
  
Legacy ER Project ID
14102  
Legacy GOLD ID
Gi03572  
NCBI BioProject Name gamma proteobacterium HIMB55
NCBI BioProject ID 46495
NCBI BioProject Accession PRJNA46495
NCBI Locus Tag
OMB55  
NCBI BioSample Accession SAMN00010579
PI Michael Rappe
Added By Nikos Kyrpides on 2008-11-08
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Marine Microbial Initiative (MMI)
Environmental
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute
  
Funding Agency Gordon and Betty Moore Foundation Marine Microbiology Initiative (USA)
Project Description
gamma proteobacterium HIMB55 Genome sequencing  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information Moore Foundation
Taxonomy
Database
  
Genome Publications Journal of bacteriology 194(9):2393-4 Genome sequence of strain HIMB55, a novel marine gammaproteobacterium of the OM60/NOR5 clade.
Other Publications
  
PROJECT COMPOSITION
Study Gammaproteobacteria sp. OM60 HIMB55
Organism Gammaproteobacteria sp. OM60 HIMB55
Analysis Projects Gammaproteobacteria sp. OM60 HIMB55
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
53  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0004209
Organism Name
Gammaproteobacteria sp. OM60 HIMB55  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
  
Genus Synonyms
  
Species
Gammaproteobacteria sp. OM60 HIMB55  
Subspecies
  
Species Synonyms
  
Strain
HIMB55  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 745014
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Cellvibrionales  
NCBI Family
Halieaceae  
NCBI Genus
  
NCBI Species
gamma proteobacterium HIMB55  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Marine
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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