PROJECT INFORMATION
GOLD Project ID
Gp0041990  
Project Name
Massilia sp. 9096  
Other Names
  
Legacy ER Project ID
47907  
Legacy GOLD ID
Gi0047907  
NCBI BioProject Name Massilia sp. 9096
NCBI BioProject ID 247912
NCBI BioProject Accession PRJNA247912
NCBI Locus Tag
FA90  
NCBI BioSample Accession SAMN02787000
PI David A. Baltrus
Added By JGI automated process on 2013-05-14
Last Modified By JGI automated process on 2018-10-08
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Convergent evolution of an endohyphal lifestyle and mutualism in phylogenetically diverse bacteria  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2050992
Experiment Title Massilia sp. 9096
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name WWWP
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2050993
Experiment Title Massilia sp. 9096
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name WWWP
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2050994
Experiment Title Massilia sp. 9096
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name WWWP
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2050991
Experiment Title Massilia sp. 9096
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name WWWP
Library Layout SINGLE
Library Instrument PAC_BIO_RS
PROJECT COMPOSITION
Study Convergent evolution of an endohyphal lifestyle and mutualism in phylogenetically diverse bacteria
Organism Massilia sp. 9096
Analysis Projects Massilia sp. 9096
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Illumina HiSeq 2000
PacBio RS II
Library Method (MIGS-28)
PacBio >10kb w/ AMPure Bead Size Selection, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0041990
Organism Name
Massilia sp. 9096  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Massilia  
Genus Synonyms
  
Species
Massilia sp. 9096  
Subspecies
  
Species Synonyms
  
Strain
9096  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1500894
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
Oxalobacteraceae  
NCBI Genus
Massilia  
NCBI Species
Massilia sp. 9096  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?