PROJECT INFORMATION
GOLD Project ID
Gp0004194  
Project Name
Roseibium sp. TrichSKD4  
Other Names
  
Legacy ER Project ID
14107  
Legacy GOLD ID
Gi03577  
NCBI BioProject Name Roseibium sp. TrichSKD4
NCBI BioProject ID 46497
NCBI BioProject Accession PRJNA46497
NCBI Locus Tag
TRICHSKD4  
NCBI BioSample Accession SAMN02436310
PI Mann E
Added By Nikos Kyrpides on 2008-11-08
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Marine Microbial Initiative (MMI)
Environmental
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute
  
Funding Agency Gordon and Betty Moore Foundation Marine Microbiology Initiative (USA)
Project Description
Roseibium sp. TrichSKD4 genome sequencing project.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Roseibium sp. TrichSKD4
Organism Roseibium sp. TrichSKD4
Analysis Projects Roseibium sp. TrichSKD4
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
54  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0004194
Organism Name
Roseibium sp. TrichSKD4  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Roseibium  
Genus Synonyms
  
Species
Roseibium sp. TrichSKD4  
Subspecies
  
Species Synonyms
  
Strain
TrichSKD4  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 744980
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Rhodobacteraceae  
NCBI Genus
Roseibium  
NCBI Species
Roseibium sp. TrichSKD4  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Microbial  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Marine
Host
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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