PROJECT INFORMATION | |
---|---|
GOLD Project ID
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Gp0003699
|
Project Name
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Micrococcus luteus SK58
|
Other Names
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|
Legacy ER Project ID
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13398
|
Legacy GOLD ID
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Gi02817
|
NCBI BioProject Name | Micrococcus luteus SK58 |
NCBI BioProject ID
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34071 |
NCBI BioProject Accession
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PRJNA34071 |
NCBI Locus Tag
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HMPREF0569
|
NCBI BioSample Accession
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SAMN00008343 |
PI | Dodson R. |
Added By |
Heather Creasy
on 2008-01-02 |
Last Modified By |
JGI automated process
on 2014-03-26 |
Project Comments |
|
Project Status
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Permanent Draft
|
Project Relevance
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Human Microbiome Project (HMP) Medical |
Sequencing Center
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J. Craig Venter Institute (JCVI)
(USA)
|
Collaborating Institute
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|
Funding Agency
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NIH
(USA)
|
Project Description
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reference genome for the Human Microbiome Project
|
Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
|
EXTERNAL PROJECT LINKS | |
Project Information
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|
Database
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|
Genome Publications
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Other Publications
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|
PROJECT COMPOSITION | |
Study |
Human Microbiome Project (HMP) Reference Genomes |
Organism |
Micrococcus luteus SK58 |
Analysis Projects |
Micrococcus luteus SK58 |
Number of Analysis Projects |
1 |
Number of DAPs |
0
|
SEQUENCING INFORMATION | |
---|---|
Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 2: High-Quality Draft |
Finishing Goal
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Level 2: High-Quality Draft |
Sequencing Comments
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|
Sequencing Technology
(MIGS-29)
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454 |
Library Method
(MIGS-28)
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|
Number Of Reads
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|
Read Size
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|
Vector
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|
GC Percent |
73
|
Chromosome Count |
|
Plasmid Count |
|
ORGANISM NAME | |
---|---|
GOLD Organism ID |
Go0003699 |
Organism Name |
Micrococcus luteus SK58
|
Other names (alias, synonyms, short names, common names) |
|
Organism Domain |
BACTERIAL
|
Phylogeny |
ACTINOBACTERIA
|
Genus |
Micrococcus
|
Genus Synonyms |
|
Species |
Micrococcus luteus
|
Subspecies |
|
Species Synonyms |
|
Strain |
SK58
|
Strain Synonyms |
|
Serovar-Biovar |
|
Culture Collection ID |
BEI HM-114
|
Type Strain |
Unknown
|
Exemplar DOI |
|
Exemplar Name |
|
Taxon DOI |
|
Biosafety Level |
1
|
Organism Comments |
|
Cultured |
Yes
|
Culture Type |
Isolate
|
Organism Type |
Natural
|
Uncultured Type |
|
Commercial Strain |
|
Commercial Strain Comments |
|
ORGANISM TAXONOMY
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|
NCBI Taxonomy ID |
596312 |
NCBI Superkingdom |
Bacteria
|
NCBI Kingdom |
|
NCBI Phylum |
Actinobacteria
|
NCBI Class |
Actinobacteria
|
NCBI Order |
Micrococcales
|
NCBI Family |
Micrococcaceae
|
NCBI Genus |
Micrococcus
|
NCBI Species |
Micrococcus luteus
|
ISOLATION CLASSIFICATION | |
Ecosystem |
Host-associated
|
Ecosystem Category |
Human
|
Ecosystem Type |
Skin
|
Ecosystem Subtype |
Unclassified
|
Specific Ecosystem |
Unclassified
|
ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
|
Genbank 16S ID |
|
GENERAL PROPERTIES | |
---|---|
Oxygen Requirement |
Aerobe
|
Cell Shape |
Coccus-shaped
|
Motility |
Nonmotile
|
Sporulation |
Nonsporulating
|
Temperature Range |
Mesophile
|
Temperature Optimum |
|
Salinity |
|
pH |
|
Cell Diameter |
|
Cell Length |
|
Color |
|
Gram Staining |
Gram+
|
Biotic Relationships | Free living |
Symbiotic Physical Interaction |
|
Symbiotic Relationship |
|
Symbiont Name |
|
Symbiont Taxon ID |
|
Cell Arrangements |
Tetrads |
Diseases |
|
Known Habitats |
Host |
Metabolisms |
|
Phenotypes |
|
Energy Sources |
Heterotroph |
HMP METADATA | |
---|---|
HMP ID |
569
|
Show in DACC? |
Yes
|
HMP Project Status |
Complete
|
BEI Status |
|
NCBI Submission Status |
6. annotation (and sequence) public on NCBI site
|
Isolate Suggestion Source |
|
HMP Isolation Body Sample Site |
Skin
|
HMP Isolation Body Sample Subsite |
Left arm
|
HMP Finishing Goal |
|
Source, Sample & Medical Relevance Comments |
|
Isolate Availability Comments |
yes--NYUSOM bacterial library (3); currently at JCVI
|
Project Comments |
|
DNA Received |
Yes
|
Date DNA Received |
2008-02-11
|
Date Sequencing Begins |
|
Date Draft Sequencing Completed |
|
Cross Reference ID |
|
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