Studies
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38,678 |
|
Biosamples
|
80,370 |
|
Sequencing Projects
|
301,304 |
|
Analysis Projects
|
244,088 |
| Organisms | 362,420 |
| PROJECT INFORMATION | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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GOLD Project ID
|
Gp0003699
|
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Project Name
|
Micrococcus luteus SK58
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Other Names
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Legacy ER Project ID
|
13398
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Legacy GOLD ID
|
Gi02817
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| NCBI BioProject Name | Micrococcus luteus SK58 | ||||||||||||||||
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NCBI BioProject ID
|
34071 |
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NCBI BioProject Accession
|
PRJNA34071 |
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NCBI Locus Tag
|
HMPREF0569
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NCBI BioSample Accession
|
SAMN00008343 |
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| PI | Dodson R. | ||||||||||||||||
| Added By |
Heather Creasy
on 2008-01-02 |
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| Last Modified By |
JGI automated process
on 2014-03-26 |
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| Project Comments |
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Project Status
|
Permanent Draft
|
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Project Relevance
|
Human Microbiome Project (HMP) Medical |
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Sequencing Center
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J. Craig Venter Institute (JCVI)
(USA)
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Collaborating Institute
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Funding Agency
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NIH
(USA)
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Project Description
|
reference genome for the Human Microbiome Project
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| Is JGI Project |
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Project Information Visibility
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Public | ||||||||||||||||
| PROJECT TYPE | |||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |||||||||||||||||
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Project Information
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Database
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Genome Publications
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Other Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||
| Study |
Human Microbiome Project (HMP) Reference Genomes |
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| Organism |
Micrococcus luteus SK58 |
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| Analysis Projects |
Micrococcus luteus SK58 |
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| Number of Analysis Projects |
1 |
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| Number of DAPs |
0
|
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| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 2: High-Quality Draft |
|
Finishing Goal
|
Level 2: High-Quality Draft |
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Sequencing Comments
|
|
|
Sequencing Technology
(MIGS-29)
|
454 |
|
Library Method
(MIGS-28)
|
|
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Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
73
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0003699 |
| Organism Name |
Micrococcus luteus SK58
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
ACTINOBACTERIA
|
| Genus |
Micrococcus
|
| Genus Synonyms |
|
| Species |
Micrococcus luteus
|
| Subspecies |
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| Species Synonyms |
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| Strain |
SK58
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
BEI HM-114
|
| Type Strain |
Unknown
|
| Exemplar DOI |
|
| Exemplar Name |
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| Taxon DOI |
|
| Biosafety Level |
1
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
596312 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Actinobacteria
|
| NCBI Class |
Actinobacteria
|
| NCBI Order |
Micrococcales
|
| NCBI Family |
Micrococcaceae
|
| NCBI Genus |
Micrococcus
|
| NCBI Species |
Micrococcus luteus
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Human
|
| Ecosystem Type |
Skin
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Aerobe
|
| Cell Shape |
Coccus-shaped
|
| Motility |
Nonmotile
|
| Sporulation |
Nonsporulating
|
| Temperature Range |
Mesophile
|
| Temperature Optimum |
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram+
|
| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
Tetrads |
| Diseases |
|
| Known Habitats |
Host |
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
Heterotroph |
| HMP METADATA | |
|---|---|
| HMP ID |
569
|
| Show in DACC? |
Yes
|
| HMP Project Status |
Complete
|
| BEI Status |
|
| NCBI Submission Status |
6. annotation (and sequence) public on NCBI site
|
| Isolate Suggestion Source |
|
| HMP Isolation Body Sample Site |
Skin
|
| HMP Isolation Body Sample Subsite |
Left arm
|
| HMP Finishing Goal |
|
| Source, Sample & Medical Relevance Comments |
|
| Isolate Availability Comments |
yes--NYUSOM bacterial library (3); currently at JCVI
|
| Project Comments |
|
| DNA Received |
Yes
|
| Date DNA Received |
2008-02-11
|
| Date Sequencing Begins |
|
| Date Draft Sequencing Completed |
|
| Cross Reference ID |
|
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