PROJECT INFORMATION
GOLD Project ID
Gp0036968  
Project Name
Natrinema versiforme JCM 10478  
Other Names
  
Legacy ER Project ID
42913  
Legacy GOLD ID
Gi0042913  
NCBI BioProject Name Natrinema versiforme JCM 10478
NCBI BioProject ID 174938
NCBI BioProject Accession PRJNA174938
NCBI Locus Tag
C489  
NCBI BioSample Accession SAMN02471670
PI
Added By JGI automated process on 2013-04-02
Last Modified By Hema Katta on 2019-01-09
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center University of California, Davis (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications PLoS genetics 10(11):e1004784 Phylogenetically driven sequencing of extremely halophilic archaea reveals strategies for static and dynamic osmo-response.
Other Publications
  
PROJECT COMPOSITION
Study Haloarchaeal genomes
Organism Natrinema versiforme JCM 10478
Analysis Projects Natrinema versiforme JCM 10478
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina GAIIx
Illumina HiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
64  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0036968
Organism Name
Natrinema versiforme JCM 10478  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-HALOBACTERIA  
Genus
Natrinema  
Genus Synonyms
  
Species
Natrinema versiforme  
Subspecies
  
Species Synonyms
  
Strain
JCM 10478  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
JCM 10478  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.343  
Exemplar Name
Natrinema versiforme  
Taxon DOI
10.1601/tx.343  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1227496
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Halobacteria  
NCBI Order
Natrialbales  
NCBI Family
Natrialbaceae  
NCBI Genus
Natrinema  
NCBI Species
Natrinema versiforme  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Non-marine Saline and Alkaline  
Ecosystem Subtype
Hypersaline  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AB023426
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Pleomorphic-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
37 - 46  
Salinity
Halophile  
pH
6.5 - 7.0  
Cell Diameter
  
Cell Length
  
Color
Red  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Fresh water
Metabolisms
  
Phenotypes
  
Energy Sources Chemoorganotroph

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?