PROJECT INFORMATION
GOLD Project ID
Gp0036127  
Project Name
Edwardsiella tarda C07-087  
Other Names
  
Legacy ER Project ID
41093  
Legacy GOLD ID
Gi39290, Gc0041093  
NCBI BioProject Name Edwardsiella piscicida C07-087
NCBI BioProject ID 187997
NCBI BioProject Accession PRJNA187997
NCBI Locus Tag
ETAC  
NCBI BioSample Accession SAMN02603613
PI Lawrence M
Added By JGI automated process on 2013-02-26
Last Modified By Alejandro Rodriguez Mojica on 2018-07-24
Project Comments
  
Project Status
Complete and Published  
Project Relevance Agricultural
Sequencing Center Mississippi State University (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Edwardsiella tarda is the only known pathogen in the family Enterobacteriaceae that causes disease in both humans and poikilothermic species. In humans, E. tarda is typically associated with gastrointestinal infections and may progress to septicemia. In catfish, E. tarda causes a sporadic disease called emphysematous putrefactive disease, which may begin as small punctate cutaneous erosions that progress to abscesses deep within the musculature. However, E. tarda is increasingly being isolated from large outbreaks of gastrointestinal septicemia in commercial catfish operations. E. tarda isolate C07-087 is from an outbreak of gastrointestinal septicemia in a commercial catfish pond in Mississippi.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome announcements Complete Genome Sequence of Channel Catfish Gastrointestinal Septicemia Isolate Edwardsiella tarda C07-087.
Other Publications
  
PROJECT COMPOSITION
Study Edwardsiella tarda C07-087
Organism Edwardsiella tarda C07-087
Analysis Projects Edwardsiella tarda C07-087
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina GAIIx
454 GS FLX Titanium
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
60  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0036127
Organism Name
Edwardsiella tarda C07-087  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA  
Genus
Edwardsiella  
Genus Synonyms
  
Species
Edwardsiella tarda  
Subspecies
  
Species Synonyms
  
Strain
C07-087  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1288122
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Hafniaceae  
NCBI Genus
Edwardsiella  
NCBI Species
Edwardsiella piscicida  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Fish  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Septicemia
Known Habitats Host
Gastrointestinal tract
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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