PROJECT INFORMATION
GOLD Project ID
Gp0035863  
Project Name
Sedimentibacter sp. B4  
Other Names
  
Legacy ER Project ID
41146  
Legacy GOLD ID
Gi39343  
NCBI BioProject Name Dehalobacter-Sedimentibacter metagenome
NCBI BioProject ID 177097
NCBI BioProject Accession PRJEB385
NCBI Locus Tag
BN358  
NCBI BioSample Accession SAMEA2271919
PI
Added By JGI automated process on 2013-02-26
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Wageningen University (Netherlands)
Collaborating Institute
  
Funding Agency
  
Project Description
Dehalobacter sp. E1 grows in strict coculture with Sedimentibacter sp. B4. The metagenome of the coculture and genome of strain B4 were sequenced. Filtering of the Dehalobacter genome sequence data from the metagenomic sequence of the coculture was done based on BLAST hits and G+C content. The Sedimentibacter genome sequence was used to query the metagenomic coculture sequence. Contigs of more than 150 bp in length, with at least 2 reads, and having no hit with the Sedimentibacter contigs of more than 90% identity for at least 100 bp were binned as Dehalobacter.  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Sedimentibacter sp. B4
Organism Sedimentibacter sp. B4
Analysis Projects Sedimentibacter sp. B4
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
38  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0035863
Organism Name
Sedimentibacter sp. B4  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Sedimentibacter  
Genus Synonyms
  
Species
Sedimentibacter sp. B4  
Subspecies
  
Species Synonyms
  
Strain
B4  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 304766
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Tissierellia  
NCBI Order
  
NCBI Family
  
NCBI Genus
Sedimentibacter  
NCBI Species
Sedimentibacter sp. B4  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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