PROJECT INFORMATION
GOLD Project ID
Gp0347880  
Project Name
Fibrobacter succinogenes UWB7 Transcriptome - UWB7_SG_R4_S  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject ID
NCBI BioProject Accession
NCBI Locus Tag
  
NCBI BioSample Accession
PI Michelle O'Malley
Added By JGI automated process on 2018-11-09
Last Modified By JGI automated process on 2019-05-04
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Fibrobacter succinogenes UWB7 Transcriptome  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid RNA
Sequencing Strategy
Transcriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Determining the genomic basis for interactions between gut fungi and methanogenic archaea
Organism Fibrobacter succinogenes UWB7
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Library Method (MIGS-28)
Illumina Low Input RNASeq w/rRNA Depletion, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0471787
Organism Name
Fibrobacter succinogenes UWB7  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIBROBACTERES  
Genus
Fibrobacter  
Genus Synonyms
  
Species
Fibrobacter succinogenes  
Subspecies
  
Species Synonyms
  
Strain
UWB7  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 833
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Fibrobacteres  
NCBI Class
Fibrobacteria  
NCBI Order
Fibrobacterales  
NCBI Family
Fibrobacteraceae  
NCBI Genus
Fibrobacter  
NCBI Species
Fibrobacter succinogenes  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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