PROJECT INFORMATION
GOLD Project ID
Gp0344523  
Project Name
Ruegeria pomeroyi DSS-3 Transposon Mutagenesis - T8_LowC_A  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Ruegeria pomeroyi DSS-3 Transposon Mutagenesis - T8_LowC_A
NCBI BioProject ID 501666
NCBI BioProject Accession PRJNA501666
NCBI Locus Tag
  
NCBI BioSample Accession SAMN10361011
PI Mary Ann Moran
Added By JGI automated process on 2018-10-23
Last Modified By JGI automated process on 2018-11-01
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Transposon Mutagenesis Sequencing of Ruegeria pomeroyi DSS-3 to determine the genetic basis for heterotrophic carbon processing in the sea  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Transposon Mutagenesis Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Marine bacterioplanktonic communities from the University of Georgia, USA for heterotrophic carbon processing in the sea
Organism Ruegeria pomeroyi DSS-3
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
64  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0000514
Organism Name
Ruegeria pomeroyi DSS-3  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Ruegeria  
Genus Synonyms
Silicibacter  
Species
Ruegeria pomeroyi  
Subspecies
  
Species Synonyms
  
Strain
DSS-3  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 700808  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.1152  
Exemplar Name
Ruegeria pomeroyi  
Taxon DOI
10.1601/tx.11006  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 246200
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Rhodobacteraceae  
NCBI Genus
Ruegeria  
NCBI Species
Ruegeria pomeroyi  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 118527
Genbank 16S ID AF098491
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Fresh water
Metabolisms
  
Phenotypes Sulfur cycle
Energy Sources Heterotroph

 

 

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