PROJECT INFORMATION
GOLD Project ID
Gp0323267  
Project Name
Pseudophaeobacter leonis 306  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Pseudophaeobacter leonis 306 genome sequencing
NCBI BioProject ID 378343
NCBI BioProject Accession PRJNA378343
NCBI Locus Tag
B4968  
NCBI BioSample Accession SAMN06545315
PI
Added By JGI automated process on 2018-07-12
Last Modified By Hema Katta on 2018-07-20
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Centre de Biophysique Moleculaire
Collaborating Institute
  
Funding Agency
  
Project Description
Pseudophaeobacter leonis 306 genome sequencing  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications International journal of systematic and evolutionary microbiology 63(Pt 9):3301-6 Phaeobacter leonis sp. nov., an alphaproteobacterium from Mediterranean Sea sediments.
Genome announcements Draft Genome Sequence of Type Strain 306, an Alphaproteobacterium Isolated from Mediterranean Sea Sediments.
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Pseudophaeobacter leonis 306 genome sequencing
Organism Pseudophaeobacter leonis 306
Analysis Projects Pseudophaeobacter leonis 306
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0454941
Organism Name
Pseudophaeobacter leonis 306  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Pseudophaeobacter  
Genus Synonyms
  
Species
Pseudophaeobacter leonis  
Subspecies
  
Species Synonyms
  
Strain
306  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
10.1601/ex.24496  
Exemplar Name
Pseudophaeobacter leonis  
Taxon DOI
10.1601/tx.25971  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1144477
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Rhodobacteraceae  
NCBI Genus
Pseudophaeobacter  
NCBI Species
Pseudophaeobacter leonis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Sediment  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?