PROJECT INFORMATION
GOLD Project ID
Gp0302518  
Project Name
Methanobrevibacter smithii KB11  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Methanobrevibacter smithii KB11 genome sequencing
NCBI BioProject ID 350240
NCBI BioProject Accession PRJNA350240
NCBI Locus Tag
BK798  
NCBI BioSample Accession SAMN05935551
PI
Added By JGI automated process on 2018-03-01
Last Modified By Supratim Mukherjee on 2018-11-06
Project Comments
  
Project Status
Complete and Published  
Project Relevance Medical
Sequencing Center Korea Research Institute of Bioscience and Biotechnology (South Korea)
Collaborating Institute
  
Funding Agency
  
Project Description
Methanobrevibacter smithii KB11 genome sequencing  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome announcements Complete Genome Sequence of Strain KB11, Isolated from a Korean Fecal Sample.
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX3529773
Experiment Title Genome sequencing of Methanobrevibacter smithii KB11
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name KB11_pacbio
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3529774
Experiment Title Genome sequencing of Methanobrevibacter smithii KB11
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name KB11_miseq
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study Methanobrevibacter smithii KB11 genome sequencing
Organism Methanobrevibacter smithii KB11
Analysis Projects Methanobrevibacter smithii KB11
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Illumina MiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0408323
Organism Name
Methanobrevibacter smithii KB11  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-METHANOBACTERIA  
Genus
Methanobrevibacter  
Genus Synonyms
  
Species
Methanobrevibacter smithii  
Subspecies
  
Species Synonyms
  
Strain
KB11  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2173
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Methanobacteria  
NCBI Order
Methanobacteriales  
NCBI Family
Methanobacteriaceae  
NCBI Genus
Methanobrevibacter  
NCBI Species
Methanobrevibacter smithii  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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