PROJECT INFORMATION
GOLD Project ID
Gp0302294  
Project Name
Nocardia seriolae UTF1  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Nocardia seriolae UTF1 genome sequencing
NCBI BioProject ID 356038
NCBI BioProject Accession PRJDB5277
NCBI Locus Tag
NSERUTF1  
NCBI BioSample Accession SAMD00066002
PI
Added By JGI automated process on 2018-03-01
Last Modified By JGI automated process on 2018-03-02
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center National Research Institute of Fisheries Science
Collaborating Institute
  
Funding Agency
  
Project Description
Nocardia seriolae UTF1 genome sequencing  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications PloS one 12(3):e0173198 Analysis of the complete genome sequence of Nocardia seriolae UTF1, the causative agent of fish nocardiosis: The first reference genome sequence of the fish pathogenic Nocardia species.
Other Publications
  
PROJECT COMPOSITION
Study Nocardia seriolae UTF1 genome sequencing
Organism Nocardia seriolae UTF1
Analysis Projects Nocardia seriolae UTF1
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0408108
Organism Name
Nocardia seriolae UTF1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Nocardia  
Genus Synonyms
  
Species
Nocardia seriolae  
Subspecies
  
Species Synonyms
  
Strain
UTF1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 37332
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Corynebacteriales  
NCBI Family
Nocardiaceae  
NCBI Genus
Nocardia  
NCBI Species
Nocardia seriolae  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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