PROJECT INFORMATION
GOLD Project ID
Gp0302250  
Project Name
Collinsella aerofaciens indica  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Collinsella aerofaciens indica genome sequencing
NCBI BioProject ID 415274
NCBI BioProject Accession PRJNA415274
NCBI Locus Tag
CSV91  
NCBI BioSample Accession SAMN07821249
PI
Added By JGI automated process on 2018-03-01
Last Modified By Hema Katta on 2018-08-23
Project Comments
  
Project Status
Complete and Published  
Project Relevance Medical
Sequencing Center Translational Health Science and Technology Institute
Collaborating Institute
  
Funding Agency
  
Project Description
Collinsella aerofaciens indica genome sequencing  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome announcements Complete Genome Sequence of Isolated from the Gut of a Healthy Indian Subject.
Other Publications
  
PROJECT COMPOSITION
Study Collinsella aerofaciens indica genome sequencing
Organism Collinsella aerofaciens indica
Analysis Projects Collinsella aerofaciens indica
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0408065
Organism Name
Collinsella aerofaciens indica  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Collinsella  
Genus Synonyms
  
Species
Collinsella aerofaciens  
Subspecies
  
Species Synonyms
  
Strain
indica  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 74426
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Coriobacteriia  
NCBI Order
Coriobacteriales  
NCBI Family
Coriobacteriaceae  
NCBI Genus
Collinsella  
NCBI Species
Collinsella aerofaciens  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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