PROJECT INFORMATION
GOLD Project ID
Gp0295012  
Project Name
Pseudomonas putida KT2440 transcriptome - relA_lig_3  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Pseudomonas putida KT2440 transcriptome - relA_lig_3
NCBI BioProject ID 455897
NCBI BioProject Accession PRJNA455897
NCBI Locus Tag
  
NCBI BioSample Accession SAMN09064757
PI Mitchell Thompson
Added By JGI automated process on 2018-02-09
Last Modified By JGI automated process on 2019-06-17
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Pseudomonas putida KT2440 transcriptome to understanding Short Chain Alcohol toxicity; mid-log growth stage; relA mutant grown in M9 medium with lignin  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid RNA
Sequencing Strategy
Transcriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Transcriptomics to understand Short Chain Alcohol Toxicity in Pseudomonas putida KT2440
Organism Pseudomonas putida KT2440
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-Rapid
Library Method (MIGS-28)
Illumina RNASeq w/rRNA Depletion, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0000665
Organism Name
Pseudomonas putida KT2440  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Pseudomonas  
Genus Synonyms
  
Species
Pseudomonas putida  
Subspecies
  
Species Synonyms
  
Strain
KT2440  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 47054  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
Involved in element cycling and the degradation of biogenic and xenobiotic pollutants. Originally isolated as a strain that is able to degrade meta-toluate.  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 303
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Pseudomonadales  
NCBI Family
Pseudomonadaceae  
NCBI Genus
Pseudomonas  
NCBI Species
Pseudomonas putida  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Lab synthesis  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 113525
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Soil
Metabolisms Saprotroph
Phenotypes Saprophyte
Non-Pathogen
Energy Sources Heterotroph

 

 

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