PROJECT INFORMATION
GOLD Project ID
Gp0294901  
Project Name
Chromobacterium violaceum ATCC 315322 transcriptomics - 2mem_Cv_Bt_25hr_BR1.2  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Chromobacterium violaceum ATCC 315322 transcriptomics - 2mem_Cv_Bt_25hr_BR1.2
NCBI BioProject ID 439515
NCBI BioProject Accession PRJNA439515
NCBI Locus Tag
  
NCBI BioSample Accession SAMN08769789
PI Ashley Shade
Added By JGI automated process on 2018-02-09
Last Modified By JGI automated process on 2018-10-01
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Chromobacterium violaceum ATCC 315322 transcriptome; Cells grown in M9-Glucose medium at a pH of 7.4 and a temperature of 27 C in the proximity of Burkholderia thailandensis E264 for 25 hours  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid RNA
Sequencing Strategy
Transcriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study System-level temporal dynamics of microbial interactions in a synthetic bacterial community
Organism Chromobacterium violaceum ATCC 315322
Analysis Projects Chromobacterium violaceum ATCC 315322 transcriptomics - 2mem_Cv_Bt_25hr_BR1.2
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina Low Input RNASeq w/rRNA Depletion, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
65  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0367764
Organism Name
Chromobacterium violaceum ATCC 315322  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Chromobacterium  
Genus Synonyms
  
Species
Chromobacterium violaceum  
Subspecies
  
Species Synonyms
  
Strain
ATCC 315322  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 315322  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 536
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Neisseriales  
NCBI Family
Chromobacteriaceae  
NCBI Genus
Chromobacterium  
NCBI Species
Chromobacterium violaceum  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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