PROJECT INFORMATION
GOLD Project ID
Gp0025952  
Project Name
Pediococcus lolii NGRI 0510Q  
Other Names
  
Legacy ER Project ID
29215  
Legacy GOLD ID
Gi21149  
NCBI BioProject Name Pediococcus lolii NGRI 0510Q
NCBI BioProject ID 174408
NCBI BioProject Accession PRJDB499
NCBI Locus Tag
PLO  
NCBI BioSample Accession SAMD00036646
PI
Added By JGI automated process on 2012-09-12
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Agricultural
Sequencing Center TGen (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Draft genome sequence of silage-making lactic acid bacteria, Pediococcus lolii NGRI 0510Q was determined. The strain was isolated from silage produced in Ishigaki island, Okinawa, Japan.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome announcements Draft Genome Sequence of Pediococcus lolii NGRI 0510Q(T) Isolated from Ryegrass Silage.
Other Publications
  
PROJECT COMPOSITION
Study Pediococcus lolii NGRI 0510Q
Organism Pediococcus lolii NGRI 0510Q
Analysis Projects Pediococcus lolii NGRI 0510Q
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Ion Torrent PGM
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
42  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0025952
Organism Name
Pediococcus lolii NGRI 0510Q  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Pediococcus  
Genus Synonyms
  
Species
Pediococcus lolii  
Subspecies
  
Species Synonyms
  
Strain
NGRI 0510Q  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 19927  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.14268  
Exemplar Name
Pediococcus lolii  
Taxon DOI
10.1601/tx.14268  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1229281
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Lactobacillaceae  
NCBI Genus
Pediococcus  
NCBI Species
Pediococcus acidilactici  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Food production  
Ecosystem Type
Silage fermentation  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AB362985
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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