PROJECT INFORMATION
GOLD Project ID
Gp0257824  
Project Name
Rhodobacter sphaeroides 2.4.1  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Genome sequencing of Rhodobacter sphaeroides 2.4.1
NCBI BioProject ID 40077
NCBI BioProject Accession PRJNA40077
NCBI Locus Tag
RY95  
NCBI BioSample Accession SAMN02596919
PI
Added By JGI automated process on 2017-11-08
Last Modified By Supratim Mukherjee on 2018-01-10
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Broad Institute (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Genome sequencing of Rhodobacter sphaeroides 2.4.1  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome research 22(11):2270-7 Finished bacterial genomes from shotgun sequence data.
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Genome sequencing of Rhodobacter sphaeroides 2.4.1
Organism Rhodobacter sphaeroides 2.4.1
Analysis Projects Rhodobacter sphaeroides 2.4.1
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
PacBio RS
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0000309
Organism Name
Rhodobacter sphaeroides 2.4.1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Rhodobacter  
Genus Synonyms
  
Species
Rhodobacter sphaeroides  
Subspecies
  
Species Synonyms
  
Strain
2.4.1  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC BAA-808  
Type Strain
No  
Exemplar DOI
10.1601/ex.1507  
Exemplar Name
Rhodobacter sphaeroides  
Taxon DOI
10.1601/tx.1044  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 272943
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Rhodobacteraceae  
NCBI Genus
Rhodobacter  
NCBI Species
Rhodobacter sphaeroides  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 240801
Genbank 16S ID DQ342321
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
25 - 35  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Chains
Diseases None
Known Habitats
  
Metabolisms
  
Phenotypes Non-Pathogen
Energy Sources Photosynthetic

 

 

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