PROJECT INFORMATION
GOLD Project ID
Gp0025239  
Project Name
Gayadomonas joobiniege G7  
Other Names
  
Legacy ER Project ID
30563  
Legacy GOLD ID
Gc02400, Gi0030563  
NCBI BioProject Name Gayadomonas joobiniege G7
NCBI BioProject ID 175618
NCBI BioProject Accession PRJNA175618
NCBI Locus Tag
C727  
NCBI BioSample Accession SAMN02472144
PI
Added By JGI automated process on 2012-10-01
Last Modified By JGI automated process on 2014-08-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Yonsei University (South Korea)
Collaborating Institute
  
Funding Agency
  
Project Description
Genome Sequence of the Agar-Degrading Marine Bacterium Gayadomonas joobiniege G7. Gayadomonas joobiniege G7 is agar-degrading marine gammaproteobacterium isolated from coastal seawater in Korea.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 194(24):6961-2 Genome sequence of the agar-degrading marine bacterium Alteromonadaceae sp. strain G7.
Other Publications
  
PROJECT COMPOSITION
Study Gayadomonas joobiniege G7
Organism Gayadomonas joobiniege G7
Analysis Projects Gayadomonas joobiniege G7
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2000
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
41  
Chromosome Count
  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0025239
Organism Name
Gayadomonas joobiniege G7  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Gayadomonas  
Genus Synonyms
  
Species
Gayadomonas joobiniege  
Subspecies
  
Species Synonyms
  
Strain
G7  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1046714
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Alteromonadales  
NCBI Family
Alteromonadaceae  
NCBI Genus
Gayadomonas  
NCBI Species
Gayadomonas joobiniege  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Neritic zone  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Marine
Aquatic
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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