| PROJECT INFORMATION | |
|---|---|
GOLD Project ID
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Gp0025122
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Project Name
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Pseudomonas putida TRO1
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Other Names
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Legacy ER Project ID
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29080
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Legacy GOLD ID
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Gi21031
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| NCBI BioProject Name | Pseudomonas putida TRO1 |
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NCBI BioProject ID
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174070 |
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NCBI BioProject Accession
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PRJNA174070 |
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NCBI Locus Tag
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C206
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NCBI BioSample Accession
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SAMN02391501 |
| PI | |
| Added By |
JGI automated process
on 2012-09-06 |
| Last Modified By |
JGI automated process
on 2014-03-26 |
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Sequencing Center
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Broad Institute
(USA)
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Collaborating Institute
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Funding Agency
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Project Description
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This strain was isolated from activated sludge, Aalborg West WTTP by enrichment culture with triclosan as a sole source of carbon and energy. The strain was able to grow in LB-rich media supplemented with up to 1mgL-1 triclosan. The proteomic analysis of strain TRO1 will be carried out by in vivo metabolic labeling (15N and 13C substrates) followed by multi TOF-MS (Protein-SIP). We believe that combining genomic and proteomic studies will allow for more detailed knowledge of the metabolic pathways which allow P. putida TRO1 strain to be able to resist the antibacterial agent triclosan.
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Project Information Visibility
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Public |
| PROJECT TYPE | |
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
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Project Information
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Database
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Genome Publications
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Other Publications
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| PROJECT COMPOSITION | |
| Study |
Pseudomonas putida TRO1 |
| Organism |
Pseudomonas putida TRO1 |
| Analysis Projects |
Pseudomonas putida TRO1 |
| Number of Analysis Projects |
1 |
| Number of DAPs |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Sequencing Comments
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Sequencing Technology
(MIGS-29)
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Illumina HiSeq |
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Library Method
(MIGS-28)
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
61
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0025122 |
| Organism Name |
Pseudomonas putida TRO1
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
PROTEOBACTERIA-GAMMA
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| Genus |
Pseudomonas
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| Genus Synonyms |
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| Species |
Pseudomonas putida
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| Subspecies |
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| Species Synonyms |
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| Strain |
TRO1
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| Strain Synonyms |
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| Serovar-Biovar |
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| Culture Collection ID |
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| Type Strain |
Unknown
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
1227924 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Proteobacteria
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| NCBI Class |
Gammaproteobacteria
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| NCBI Order |
Pseudomonadales
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| NCBI Family |
Pseudomonadaceae
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| NCBI Genus |
Pseudomonas
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| NCBI Species |
Pseudomonas putida
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
Engineered
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| Ecosystem Category |
Wastewater
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| Ecosystem Type |
Unclassified
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| Ecosystem Subtype |
Unclassified
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| Specific Ecosystem |
Unclassified
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Temperature Optimum |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
Gram-
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
Heterotroph |
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