Studies
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38,685 |
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Biosamples
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80,465 |
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Sequencing Projects
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301,484 |
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Analysis Projects
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244,236 |
| Organisms | 362,422 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0024760
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Project Name
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Mycobacterium intracellulare M.i.198
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Other Names
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Legacy ER Project ID
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29094
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Legacy GOLD ID
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Gi21045
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| NCBI BioProject Name | Mycobacterium intracellulare M.i.198 |
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NCBI BioProject ID
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173913 |
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NCBI BioProject Accession
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PRJDB193 |
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NCBI Locus Tag
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MI198
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NCBI BioSample Accession
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SAMD00036621 |
| PI | |
| Added By |
JGI automated process
on 2012-09-06 |
| Last Modified By |
JGI automated process
on 2014-08-18 |
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Sequencing Center
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Broad Institute
(USA)
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Collaborating Institute
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Funding Agency
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Project Description
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Non-tuberculous mycobacteria is of great clinical importance with respect to recent increasing prevalence of non-tuberculous mycobacteriosis such as Mycobacterium avium-intracellulare complex (MAC) disease and difficulty to treat it without specific antibiotics. However, bacteriological etiology of non-tuberculous mycobacteria remains to be elucidated yet. We found a hypervirulent Mycobacterium intracellulare strain (M.i.198) isolated from immunocompetent pulmonary MAC disease humans in 2009. We performed whole genome sequencing of the M.i.198 strain in order to elucidate genomic background such as strain-specific virulence factors which impacts on clinical disease progression
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| Is JGI Project |
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Project Information Visibility
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Public |
| PROJECT TYPE | |
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
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Project Information
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Database
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Genome Publications
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Journal of bacteriology
194(22):6336
Whole-genome sequence of the hypervirulent clinical strain Mycobacterium intracellulare M.i.198.
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Other Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Mycobacterium intracellulare M.i.198 |
| Organism |
Mycobacterium intracellulare M.i.198 |
| Analysis Projects |
Mycobacterium intracellulare M.i.198 |
| Number of Analysis Projects |
1 |
| Number of DAPs |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Level 5: Non-contiguous Finished |
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Sequencing Comments
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Sequencing Technology
(MIGS-29)
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454 GS FLX |
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Library Method
(MIGS-28)
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
68
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0024760 |
| Organism Name |
Mycobacterium intracellulare M.i.198
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
ACTINOBACTERIA
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| Genus |
Mycobacterium
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| Genus Synonyms |
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| Species |
Mycobacterium intracellulare
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| Subspecies |
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| Species Synonyms |
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| Strain |
M.i.198
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
Unknown
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
1214063 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Actinobacteria
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| NCBI Class |
Actinobacteria
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| NCBI Order |
Corynebacteriales
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| NCBI Family |
Mycobacteriaceae
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| NCBI Genus |
Mycobacterium
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| NCBI Species |
Mycobacterium intracellulare
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
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| Ecosystem Category |
Human
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Temperature Optimum |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
Gram+
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
Heterotroph |
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