PROJECT INFORMATION
GOLD Project ID
Gp0023672  
Project Name
Gordonia amicalis IEGM  
Other Names
  
Legacy ER Project ID
28937  
Legacy GOLD ID
Gi20897  
NCBI BioProject Name Gordonia amicalis NBRC 100051 = JCM 11271
NCBI BioProject ID 172592
NCBI BioProject Accession PRJDB393
NCBI Locus Tag
GOAMI  
NCBI BioSample Accession SAMD00041764
PI
Added By JGI automated process on 2012-08-29
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center National Institute of Technology and Evaluation (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
To elucidate genomic features of the genus Gordonia, NITE decided to sequence all type strains of the genus Gordonia.  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id DRX058196
Experiment Title Illumina HiSeq 1000 paired end sequencing of SAMD00041764
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GA3
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_1000
 
SRA Experiment Id DRX058195
Experiment Title Illumina HiSeq 1000 paired end sequencing of SAMD00041764
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GA3
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_1000
 
SRA Experiment Id DRX058194
Experiment Title 454 GS FLX+ sequencing of SAMD00041764
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GA3
Library Layout SINGLE
Library Instrument 454 GS FLX Titanium
PROJECT COMPOSITION
Study Gordonia amicalis NBRC 100051
Organism Gordonia amicalis IEGM
Analysis Projects Gordonia amicalis IEGM
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX Titanium
Illumina HiSeq 1000
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
67  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0023672
Organism Name
Gordonia amicalis IEGM  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Gordonia  
Genus Synonyms
  
Species
Gordonia amicalis  
Subspecies
  
Species Synonyms
  
Strain
IEGM  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
NBRC 100051  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.6292  
Exemplar Name
Gordonia amicalis  
Taxon DOI
10.1601/tx.6292  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1220574
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Corynebacteriales  
NCBI Family
Gordoniaceae  
NCBI Genus
Gordonia  
NCBI Species
Gordonia amicalis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Soil
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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