PROJECT INFORMATION
GOLD Project ID
Gp0023604  
Project Name
Novosphingobium naphthalenivorans NBRC 102051  
Other Names
  
Legacy ER Project ID
28871  
Legacy GOLD ID
Gi20831  
NCBI BioProject Name Novosphingobium naphthalenivorans NBRC 102051
NCBI BioProject ID 172281
NCBI BioProject Accession PRJDB313
NCBI Locus Tag
NN5  
NCBI BioSample Accession SAMD00046703
PI
Added By JGI automated process on 2012-08-29
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center National Institute of Technology and Evaluation (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
Comparative genomics of environmental Novosphingobium isolates  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Novosphingobium genome sequencing - National Institute of Technology and Evaluation, Japan
Analysis Projects Novosphingobium naphthalenivorans NBRC 102051
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 1000
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0023604
Organism Name
Novosphingobium naphthalenivorans NBRC 102051  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Novosphingobium  
Genus Synonyms
  
Species
Novosphingobium naphthalenivorans  
Subspecies
  
Species Synonyms
  
Strain
TUT562  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
NBRC 102051  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.13495  
Exemplar Name
Novosphingobium naphthalenivorans  
Taxon DOI
10.1601/tx.13495  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1219034
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Sphingomonadales  
NCBI Family
Sphingomonadaceae  
NCBI Genus
Novosphingobium  
NCBI Species
Novosphingobium naphthalenivorans  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Contaminated  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Soil
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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