PROJECT INFORMATION
GOLD Project ID
Gp0023598  
Project Name
Pantoea agglomerans NBRC 102470  
Other Names
  
Legacy ER Project ID
28699  
Legacy GOLD ID
Gi20659  
NCBI BioProject Name Pantoea agglomerans NBRC 102470
NCBI BioProject ID 172587
NCBI BioProject Accession PRJDB388
NCBI Locus Tag
PAG01S  
NCBI BioSample Accession SAMD00046726
PI
Added By JGI automated process on 2012-08-29
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center National Institute of Technology and Evaluation (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
Pantoea agglomerans NBRC 102470 genome sequencing project  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Pantoea agglomerans NBRC 102470
Organism Pantoea agglomerans NBRC 102470
Analysis Projects Pantoea agglomerans NBRC 102470
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX Titanium
Illumina HiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0023598
Organism Name
Pantoea agglomerans NBRC 102470  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Pantoea  
Genus Synonyms
  
Species
Pantoea agglomerans  
Subspecies
  
Species Synonyms
  
Strain
NBRC 102470  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
NBRC 102470  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.3151  
Exemplar Name
Pantoea agglomerans  
Taxon DOI
10.1601/tx.3233  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1220570
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Erwiniaceae  
NCBI Genus
Pantoea  
NCBI Species
Pantoea agglomerans  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Animal  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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