PROJECT INFORMATION
GOLD Project ID
Gp0023418  
Project Name
Escherichia coli O104:H4 C227-11  
Other Names
  
Legacy ER Project ID
27895  
Legacy GOLD ID
Gi19909  
NCBI BioProject Name Escherichia coli O104:H4 str. C227-11
NCBI BioProject ID 68153
NCBI BioProject Accession PRJNA68153
NCBI Locus Tag
EUAG  
NCBI BioSample Accession SAMN00715316
PI Birren B
Added By JGI automated process on 2012-07-30
Last Modified By JGI automated process on 2014-10-31
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Broad Institute (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Proceedings of the National Academy of Sciences of the United States of America 109(8):3065-70 Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX100643
Experiment Title Genome Sequencing and Assembly of E. coli O104:H4 strains
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name LR_98_Ecoli
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX005411
Experiment Title Genome Sequencing and Assembly of E. coli O104:H4 strains
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 0109413474
Library Layout SINGLE
Library Instrument 454 GS FLX Titanium
 
SRA Experiment Id SRX095660
Experiment Title Genome Sequencing and Assembly of E. coli O104:H4 strains
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Sage-66870
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 202
 
SRA Experiment Id SRX005536
Experiment Title Genome Sequencing and Assembly of E. coli O104:H4 strains
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 454-7219
Library Layout PAIRED
Library Instrument 454 GS FLX Titanium
 
SRA Experiment Id SRX005801
Experiment Title Genome Sequencing and Assembly of E. coli O104:H4 strains
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 454-7219
Library Layout PAIRED
Library Instrument 454 GS FLX Titanium
 
SRA Experiment Id SRX095661
Experiment Title Genome Sequencing and Assembly of E. coli O104:H4 strains
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Solexa-66845
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 202
 
SRA Experiment Id SRX101297
Experiment Title Genome Sequencing and Assembly of E. coli O104:H4 strains
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name LR_98_Ecoli
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX005531
Experiment Title Genome Sequencing and Assembly of E. coli O104:H4 strains
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 454-7219
Library Layout PAIRED
Library Instrument 454 GS FLX Titanium
PROJECT COMPOSITION
Study Escherichia coli genome sequencing - Broad Institute
Organism Escherichia coli O104:H4 C227-11
Analysis Projects Escherichia coli O104:H4 C227-11
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
PacBio RS
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
51  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0012504
Organism Name
Escherichia coli O104:H4 C227-11  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Escherichia  
Genus Synonyms
  
Species
Escherichia coli  
Subspecies
  
Species Synonyms
  
Strain
C227-11  
Strain Synonyms
  
Serovar/Cultivar
O104:H4  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1048254
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Enterobacteriaceae  
NCBI Genus
Escherichia  
NCBI Species
Escherichia coli  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?