PROJECT INFORMATION
GOLD Project ID
Gp0022653  
Project Name
Pedobacter heparinus DSM 2366 Phe_etoh6  
Other Names
  
Legacy ER Project ID
26639  
Legacy GOLD ID
Gi18709  
NCBI BioProject Name
  
NCBI BioProject ID
NCBI BioProject Accession
NCBI Locus Tag
  
NCBI BioSample Accession
PI Tanja Woyke
Added By JGI automated process on 2012-07-05
Last Modified By JGI automated process on 2014-05-20
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Single-cell Fixation R&D
Organism Pedobacter heparinus HIM 762-3
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0001218
Organism Name
Pedobacter heparinus HIM 762-3  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Pedobacter  
Genus Synonyms
  
Species
Pedobacter heparinus  
Subspecies
  
Species Synonyms
  
Strain
HIM 762-3  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 2366  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.8092  
Exemplar Name
Pedobacter heparinus  
Taxon DOI
10.1601/tx.8233  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 485917
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Sphingobacteriia  
NCBI Order
Sphingobacteriales  
NCBI Family
Sphingobacteriaceae  
NCBI Genus
Pedobacter  
NCBI Species
Pedobacter heparinus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 40322
Genbank 16S ID AJ438172
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
25 - 30  
Salinity
  
pH
7  
Cell Diameter
1 - 3 um  
Cell Length
0.5 - 6 um  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Soil
Metabolisms
  
Phenotypes Chondroitinases producer
Heparinases producer
Energy Sources Chemoorganotroph

 

 

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