PROJECT INFORMATION
GOLD Project ID
Gp0222859  
Project Name
Clostridium baratii CDC51267  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Genome sequencing of Clostridium baratii CDC51267
NCBI BioProject ID 301987
NCBI BioProject Accession PRJNA301987
NCBI Locus Tag
  
NCBI BioSample Accession SAMN04262349
PI
Added By JGI automated process on 2017-07-13
Last Modified By Hema Katta on 2018-07-24
Project Comments
  
Project Status
Complete and Published  
Project Relevance Medical
Sequencing Center Los Alamos National Laboratory (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Genome sequencing of Clostridium baratii CDC51267  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome announcements Erratum for Halpin et al., "Finished Whole-Genome Sequences of Toxin Subtype E4 and Toxin Subtype F7 Strains".

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1538384
Experiment Title NPD_11_Illumina
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AK0HU
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
 
SRA Experiment Id SRX1538385
Experiment Title NPD_11_PacBio
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PB_020210
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
PROJECT COMPOSITION
Study Clostridium baratii CDC_51267 genome sequencing
Organism Clostridium baratii CDC51267
Analysis Projects Clostridium baratii CDC51267
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
PacBio RS
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0375636
Organism Name
Clostridium baratii CDC51267  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Clostridium  
Genus Synonyms
  
Species
Clostridium baratii  
Subspecies
  
Species Synonyms
  
Strain
CDC51267  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1561
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Clostridiaceae  
NCBI Genus
Clostridium  
NCBI Species
Clostridium baratii  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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