PROJECT NAME
GOLD Project ID
Gp0021804  
Project Name
Dehalococcoides mccartyi DCMB5  
Other Names
  
Legacy ER Project ID
25889  
Legacy GOLD ID
Gi18019, Gc0025889  
NCBI BioProject Name Dehalococcoides mccartyi DCMB5
NCBI BioProject ID 167311
NCBI BioProject Accession PRJNA167311
NCBI Locus Tag
DCMB  
NCBI BioSample Accession
PI Ute Lechner
Added By JGI automated process on 2012-06-08
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Environmental
Sequencing Center Friedrich Schiller University of Jena (Germany)
Collaborating Institute
  
Funding Agency
  
Project Description
Comparative genomics of organohalide-respiring bacteria. This strain was isolated from the contaminated Spittelwasser creek near Bitterfeld. It is capable of dechlorinating tri- and tetrachlorodibenzo-p-dioxin and chlorinated benzenes.  
Project Information Visibility Public
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications FEMS microbiology letters 343(2):101-4 Genome sequences of two dehalogenation specialists – Dehalococcoides mccartyi strains BTF08 and DCMB5 enriched from the highly polluted Bitterfeld region.
Other Publications
  
PROJECT COMPOSITION
Study Dehalococcoides sp. DCMB5
Analysis Projects Dehalococcoides mccartyi DCMB5
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
47  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0021804
Organism Name
Dehalococcoides mccartyi DCMB5  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CHLOROFLEXI  
Genus
Dehalococcoides  
Genus Synonyms
  
Species
Dehalococcoides mccartyi  
Subspecies
  
Species Synonyms
  
Strain
DCMB5  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1193807
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Chloroflexi  
NCBI Class
Dehalococcoidia  
NCBI Order
Dehalococcoidales  
NCBI Family
Dehalococcoidaceae  
NCBI Genus
Dehalococcoides  
NCBI Species
Dehalococcoides mccartyi  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Lotic  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Aquatic
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the AP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?