PROJECT INFORMATION
GOLD Project ID
Gp0002152  
Project Name
Photobacterium angustum S14  
Other Names
  
Legacy ER Project ID
12055  
Legacy GOLD ID
Gi00909  
NCBI BioProject Name Photobacterium angustum S14
NCBI BioProject ID 13567
NCBI BioProject Accession PRJNA13567
NCBI Locus Tag
VAS  
NCBI BioSample Accession SAMN02436086
PI
Added By Nikos Kyrpides on 2007-11-27
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Marine Microbial Initiative (MMI)
Environmental
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute University of New South Wales
Funding Agency Gordon and Betty Moore Foundation Marine Microbiology Initiative (USA)
Project Description
Model copiotrophic bacterium grows rapidly in high nutrients, forms resting-stage cells when nutrient become depleted; gram negative, motile, polarly flagellated, short rod, facultative anaerobe; model organism for starvation survival studies  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information Information
Database
  
Genome Publications Proceedings of the National Academy of Sciences of the United States of America 106(37):15527-33 The genomic basis of trophic strategy in marine bacteria.
Other Publications
  
PROJECT COMPOSITION
Study Photobacterium angustum S14
Organism Photobacterium angustum S14
Analysis Projects Photobacterium angustum S14
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
40  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0002152
Organism Name
Photobacterium angustum S14  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Photobacterium  
Genus Synonyms
  
Species
Photobacterium angustum  
Subspecies
  
Species Synonyms
  
Strain
S14  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 314292
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Vibrionales  
NCBI Family
Vibrionaceae  
NCBI Genus
Photobacterium  
NCBI Species
Photobacterium angustum  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Marine
Surface water
Metabolisms
  
Phenotypes
  
Energy Sources Copiotroph

 

 

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