PROJECT INFORMATION
GOLD Project ID
Gp0212451  
Project Name
Botryococcus braunii Showa (Race B) Gene Expression Profiling - BbB_D21_11PM_R3  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Botryococcus braunii Race B Showa Gene Expression Profiling - BbB_D21_11PM_R3
NCBI BioProject ID 403563
NCBI BioProject Accession PRJNA403563
NCBI Locus Tag
  
NCBI BioSample Accession SAMN07621410
PI Andy Koppisch
Added By JGI automated process on 2017-04-25
Last Modified By JGI automated process on 2018-10-08
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Time course gene expression profiling of hydrocarbon-producing microalga Botryococcus braunii race B (Showa)  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid RNA
Sequencing Strategy
Transcriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Genome and transcriptome sequencing of Botryococcus braunii Showa
Organism Botryococcus braunii Showa (Race B)
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina RNASeq w/PolyA Selection, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0368998
Organism Name
Botryococcus braunii Showa (Race B)  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
PLANTS-CHLOROPHYTA  
Genus
Botryococcus  
Genus Synonyms
  
Species
Botryococcus braunii  
Subspecies
  
Species Synonyms
  
Strain
  
Strain Synonyms
  
Serovar-Biovar
Showa (Race B)  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 38881
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Viridiplantae  
NCBI Phylum
Chlorophyta  
NCBI Class
Trebouxiophyceae  
NCBI Order
  
NCBI Family
Botryococcaceae  
NCBI Genus
Botryococcus  
NCBI Species
Botryococcus braunii  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Aquaculture  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  
EXPERIMENT
Experimental Conditions
Grown in 1 L glass flasks with 6500K CFL lights on a 12hr/12hr light/dark cycle and bubbling 2.5% CO2 /air  

 

 

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