PROJECT INFORMATION
GOLD Project ID
Gp0209534  
Project Name
Pontibacter mucosus DSM 100162  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Pontibacter mucosus DSM 100162
NCBI BioProject ID 443691
NCBI BioProject Accession PRJNA443691
NCBI Locus Tag
C8N40  
NCBI BioSample Accession SAMN08777459
PI Markus Göker
Added By JGI automated process on 2017-04-08
Last Modified By JGI automated process on 2019-06-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Sequencing as part of the Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II project  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX3930700
Experiment Title Pontibacter mucosus DSM 100162
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BUAYG
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II (KMG-II): from individual species to whole genera
Organism Pontibacter mucosus DSM 100162
Analysis Projects Pontibacter mucosus DSM 100162
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0368359
Organism Name
Pontibacter mucosus DSM 100162  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Pontibacter  
Genus Synonyms
  
Species
Pontibacter mucosus  
Subspecies
  
Species Synonyms
  
Strain
DSM 100162  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 100162  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.28685  
Exemplar Name
Pontibacter mucosus  
Taxon DOI
10.1601/tx.28685  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1649266
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Cytophagia  
NCBI Order
Cytophagales  
NCBI Family
Hymenobacteraceae  
NCBI Genus
Pontibacter  
NCBI Species
Pontibacter mucosus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Sediment  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID KP861851
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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