PROJECT INFORMATION
GOLD Project ID
Gp0020485  
Project Name
Salinispora pacifica CNS-143  
Other Names
  
Legacy ER Project ID
9780  
Legacy GOLD ID
Gi16869  
NCBI BioProject Name Salinispora pacifica CNS-143
NCBI BioProject ID 84389
NCBI BioProject Accession PRJNA84389
NCBI Locus Tag
Q5Q  
NCBI BioSample Accession SAMN02470895
PI
Added By JGI automated process on 2012-04-04
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Evolution
Sequencing Center University of California, San Diego, Scripps Institute of Oceanography (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Salinispora pacifica CNS-143 Genome sequencing  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications 22479523
Other Publications
  
PROJECT COMPOSITION
Study Salinispora pacifica CNS-143
Organism Salinispora pacifica CNS-143
Analysis Projects Salinispora pacifica CNS-143
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX
Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
69  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0020485
Organism Name
Salinispora pacifica CNS-143  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Salinispora  
Genus Synonyms
  
Species
Salinispora pacifica  
Subspecies
  
Species Synonyms
  
Strain
CNS-143  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1150612
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Micromonosporales  
NCBI Family
Micromonosporaceae  
NCBI Genus
Salinispora  
NCBI Species
Salinispora pacifica  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Oceanic  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
Filament-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
15-28 C  
Salinity
Halophile  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Aquatic
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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