PROJECT INFORMATION
GOLD Project ID
Gp0194184  
Project Name
Methanococcus maripaludis S2 transcriptome - Mja S  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Methanococcus maripaludis S2 transcriptome - Mja S
NCBI BioProject ID 459801
NCBI BioProject Accession PRJNA459801
NCBI Locus Tag
  
NCBI BioSample Accession SAMN09074110
PI Todd Lowe
Added By JGI automated process on 2017-01-12
Last Modified By JGI automated process on 2018-10-08
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Sequencing of Methanococcus maripaludis S2 transcriptome at stationary phase  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid RNA
Sequencing Strategy
Transcriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Sequencing Archaeal Transcriptomes
Organism Methanococcus maripaludis S2
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina Low Input RNASeq w/rRNA Depletion, Plates; Illumina RNASeq w/rRNA Depletion, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0015628
Organism Name
Methanococcus maripaludis S2  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-METHANOCOCCI  
Genus
Methanococcus  
Genus Synonyms
  
Species
Methanococcus maripaludis  
Subspecies
  
Species Synonyms
  
Strain
S2  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 14266  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 267377
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Methanococci  
NCBI Order
Methanococcales  
NCBI Family
Methanococcaceae  
NCBI Genus
Methanococcus  
NCBI Species
Methanococcus maripaludis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 268749
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Obligate anaerobe  
Cell Shape
Coccus-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
25 - 40  
Salinity
  
pH
6.5 - 8  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Sediment
Hypersaline sediment
Aquatic
Salt marsh
Metabolisms Nitrogen fixation
Hydrogenotrophic
Methanogen
Phenotypes
  
Energy Sources Chemolithoautotroph
Lithotroph

 

 

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