PROJECT INFORMATION
GOLD Project ID
Gp0193934  
Project Name
Streptococcus agalactiae S13  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Streptococcus agalactiae S13 Genome sequencing and assembly
NCBI BioProject ID 356737
NCBI BioProject Accession PRJNA356737
NCBI Locus Tag
  
NCBI BioSample Accession SAMN06124256
PI Ulisses Pereira
Added By Ulisses Pereira on 2016-12-23
Last Modified By Hema Katta on 2018-07-31
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Federal Universityof Minas Gerais
Collaborating Institute Londrina State University
Funding Agency
  
Project Description
Streptococcus agalactiae is a major fish pathogen responsible for high mortality in fish farms. The study of population diversity is relevant to know better the biology of this pathogen.  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome announcements Whole-Genome Sequence of Strain S13, Isolated from a Fish Eye from a Nile Tilapia Farm in Southern Brazil.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Complete genome sequence of Streptococcus agalactiae S13 strain
Organism Streptococcus agalactiae S13
Analysis Projects Streptococcus agalactiae S13
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) ABI 3730
Illumina MiSeq
Library Method (MIGS-28)
paired end  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0005555
Organism Name
Streptococcus agalactiae S13  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Streptococcus  
Genus Synonyms
  
Species
Streptococcus agalactiae  
Subspecies
  
Species Synonyms
  
Strain
S13  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1311
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Streptococcaceae  
NCBI Genus
Streptococcus  
NCBI Species
Streptococcus agalactiae  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Fish  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Streptococcosis
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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