PROJECT INFORMATION
GOLD Project ID
Gp0190303  
Project Name
Vibrio parahaemolyticus Klin  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Vibrio parahaemolyticus Klin genome sequencing
NCBI BioProject ID 339460
NCBI BioProject Accession PRJNA339460
NCBI Locus Tag
BFX47  
NCBI BioSample Accession SAMN05591502
PI
Added By JGI automated process on 2016-12-10
Last Modified By Hema Katta on 2018-04-03
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Medical
Sequencing Center Texas A and M University (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Vibrio parahaemolyticus Klin is a Swedish clinical strain isolated in 2010.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome announcements Draft Genome Sequences of One Marine and One Clinical Vibrio parahaemolyticus Strain, Both Isolated in Sweden.
Other Publications
  
PROJECT COMPOSITION
Study Vibrio parahaemolyticus Klin Genome sequencing
Organism Vibrio parahaemolyticus Klin
Analysis Projects Vibrio parahaemolyticus Klin
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0356037
Organism Name
Vibrio parahaemolyticus Klin  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Vibrio  
Genus Synonyms
  
Species
Vibrio parahaemolyticus  
Subspecies
  
Species Synonyms
  
Strain
Klin  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 670
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Vibrionales  
NCBI Family
Vibrionaceae  
NCBI Genus
Vibrio  
NCBI Species
Vibrio parahaemolyticus  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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