PROJECT INFORMATION
GOLD Project ID
Gp0177310  
Project Name
Janthinobacterium lividum ERGS5:01  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Janthinobacterium lividum strain:ERGS5:01
NCBI BioProject ID 327173
NCBI BioProject Accession PRJNA327173
NCBI Locus Tag
BA896  
NCBI BioSample Accession SAMN05323684
PI Rakshak Kumar
Added By Rakshak Kumar on 2016-11-23
Last Modified By Hema Katta on 2019-01-09
Project Comments
Genome Assembly of Janthinobacterium lividum ERGS5:01 a sub-glacial stream bacterium to get the genomic insight on its adaptation  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center CSIR-Institute of Himalayan Bioresource Technology (India)
Collaborating Institute
  
Funding Agency
  
Project Description
Genome Assembly of Janthinobacterium lividum ERGS5:01 a sub-glacial stream bacterium to get the genomic insight on its adaptation  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Standards in genomic sciences Strategies for high-altitude adaptation revealed from high-quality draft genome of non-violacein producing ERGS5:01.
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Janthinobacterium lividum ERGS5:01
Organism Janthinobacterium lividum ERGS5:01
Analysis Projects Janthinobacterium lividum ERGS5:01
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
Genome assembly in 16 contigs  
Sequencing Technology (MIGS-29) PacBio RS
454
Library Method (MIGS-28)
Hierarchical Genome Assembly Process v. 3  
Number Of Reads
15182  
Read Size
208,595,984 bp  
Vector
Not Applicable  
GC Percent
60  
Chromosome Count
16  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0336202
Organism Name
Janthinobacterium lividum ERGS5:01  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Janthinobacterium  
Genus Synonyms
  
Species
Janthinobacterium lividum  
Subspecies
  
Species Synonyms
  
Strain
ERGS5:01  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 29581
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
Oxalobacteraceae  
NCBI Genus
Janthinobacterium  
NCBI Species
Janthinobacterium lividum  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Subglacial lake  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
Psychrophile  
Temperature Optimum
8-10 C  
Salinity
Not known  
pH
Not known  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Chains
Diseases Undefined
Known Habitats Undefined
Metabolisms Undefined
Phenotypes Protease production
Energy Sources Chemoheterotroph

 

 

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