PROJECT INFORMATION
GOLD Project ID
Gp0176172  
Project Name
Clostridiaceae bacterium JGI 000170CP_H04  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Clostridiaceae bacterium JGI 000170CP_H04
NCBI BioProject ID 368246
NCBI BioProject Accession PRJNA368246
NCBI Locus Tag
BY951  
NCBI BioSample Accession SAMN06266815
PI Alexander Sczyrba
Added By JGI automated process on 2016-11-17
Last Modified By JGI automated process on 2019-04-28
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Single cell genome sequencing to uncover the microbiology and functional potential of biogas-producing microbial communities from production-scale biogas plants  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2524496
Experiment Title Clostridiaceae bacterium JGI 000170CP_H04
Exp Library Strategy WGA
Library Source GENOMIC
Library Selection other
Library Name BCUZT
Library Layout PAIRED
Library Instrument NEXT_SEQ_500
PROJECT COMPOSITION
Study Biogas fermentation microbial communities from biogas plants in Germany
Organism Clostridiaceae bacterium JGI 000170CP_H04
Analysis Projects Clostridiaceae bacterium JGI 000170CP_H04 (contamination screened)
Clostridiaceae bacterium JGI 000170CP_H04 (unscreened)
Number of Analysis Projects 2
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Illumina NextSeq-HO
Library Method (MIGS-28)
Production RnD, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0333438
Organism Name
Clostridiaceae bacterium JGI 000170CP_H04  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
  
Genus Synonyms
  
Species
Clostridiaceae bacterium JGI 000170CP_H04  
Subspecies
  
Species Synonyms
  
Strain
JGI 000170CP_H04  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
No  
Culture Type
  
Organism Type
Natural  
Uncultured Type
Single Cell  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1938637
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Clostridiaceae  
NCBI Genus
  
NCBI Species
Clostridiaceae bacterium JGI 000170CP_H04  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Bioreactor  
Ecosystem Type
Anaerobic  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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