PROJECT INFORMATION
GOLD Project ID
Gp0017128  
Project Name
Peptoniphilus grossensis ph5  
Other Names
  
Legacy ER Project ID
8006  
Legacy GOLD ID
Gi13722  
NCBI BioProject Name Peptoniphilus grossensis ph5
NCBI BioProject ID 82079
NCBI BioProject Accession PRJEA82079
NCBI Locus Tag
HGPG  
NCBI BioSample Accession SAMEA2271924
PI Pierre-Edouard Fournier
Added By JGI automated process on 2012-02-02
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Human Microbiome
Medical
Sequencing Center Aix-Marseille University (France)
Collaborating Institute
  
Funding Agency
  
Project Description
Peptoniphilus sp. ph5 Genome sequencing  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Standards in genomic sciences 7(2):320-30 Non contiguous-finished genome sequence and description of Peptoniphilus grossensis sp. nov.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Peptoniphilus sp. ph5
Organism Peptoniphilus grossensis ph5
Analysis Projects Peptoniphilus grossensis ph5
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX Titanium
Library Method (MIGS-28)
One 454 paired end 3-kb library  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
34  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0017128
Organism Name
Peptoniphilus grossensis ph5  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Peptoniphilus  
Genus Synonyms
  
Species
Peptoniphilus grossensis  
Subspecies
  
Species Synonyms
  
Strain
ph5  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 25475  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.24635  
Exemplar Name
Peptoniphilus grossensis  
Taxon DOI
10.1601/tx.24635  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1118057
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Tissierellia  
NCBI Order
Tissierellales  
NCBI Family
Peptoniphilaceae  
NCBI Genus
Peptoniphilus  
NCBI Species
Peptoniphilus grossensis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID JN837491
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
  
Motility
Nonmotile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Symbiotic
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Human fecal
Feces
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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