PROJECT NAME
GOLD Project ID
Gp0171221  
Project Name
Pseudomonas denitrificans 293_PDEN  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Bacterial isolate from intensive care units
NCBI BioProject ID 267549
NCBI BioProject Accession PRJNA267549
NCBI Locus Tag
ADE01  
NCBI BioSample Accession SAMN03197487
PI
Added By JGI automated process on 2016-10-20
Last Modified By Supratim Mukherjee on 2016-10-25
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Medical
Sequencing Center University of Washington (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Whole genome sequencing of bacterial isolate from Blood sample from patient in Medical/Surgical Intensive Care Unit of University of Washington Medical Center, Seattle, USA  
Project Information Visibility Public
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Whole genome sequencing of bacterial isolates collected over a 1-year period from the intensive care unit of University of Washington Medical Center
Analysis Projects Pseudomonas denitrificans 293_PDEN
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0322737
Organism Name
Pseudomonas denitrificans 293_PDEN  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Pseudomonas  
Genus Synonyms
  
Species
Pseudomonas denitrificans  
Subspecies
  
Species Synonyms
  
Strain
293_PDEN  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 43306
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Pseudomonadales  
NCBI Family
Pseudomonadaceae  
NCBI Genus
Pseudomonas  
NCBI Species
Pseudomonas denitrificans (nomen rejiciendum)  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Circulatory system  
Ecosystem Subtype
Blood  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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