PROJECT INFORMATION
GOLD Project ID
Gp0015992  
Project Name
Cellvibrionaceae bacterium 1162T.S.0a.05  
Other Names
  
Legacy ER Project ID
21353  
Legacy GOLD ID
Gi14586  
NCBI BioProject Name Cellvibrionaceae bacterium 1162T.S.0a.05
NCBI BioProject ID 187105
NCBI BioProject Accession PRJNA187105
NCBI Locus Tag
H152  
NCBI BioSample Accession SAMN02746023
PI Margo Haygood
Added By JGI automated process on 2012-01-27
Last Modified By JGI automated process on 2019-04-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute ANRT (France)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
19jun12 project name from Lynne G: Teredinibacter sp. 1162T.S.0a.05  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX717056
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name HGAY
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX717055
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name HCZW
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Genome sequencing of Philippine Mollusk Symbiont ICBG bacterial isolates from shipworm (Teredinidae) gill.
Organism Cellvibrionaceae bacterium 1162T.S.0a.05
Analysis Projects Cellvibrionaceae bacterium 1162T.S.0a.05
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
48  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0015992
Organism Name
Cellvibrionaceae bacterium 1162T.S.0a.05  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
  
Genus Synonyms
  
Species
Cellvibrionaceae bacterium 1162T.S.0a.05  
Subspecies
  
Species Synonyms
  
Strain
1162T.S.0a.05  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1286364
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Cellvibrionales  
NCBI Family
Cellvibrionaceae  
NCBI Genus
  
NCBI Species
Cellvibrionaceae bacterium 1162T.S.0a.05  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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