PROJECT INFORMATION
GOLD Project ID
Gp0150641  
Project Name
Marinobacter sp. YWL01  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Marinobacter sp. YWL01 genome sequencing and Assembly
NCBI BioProject ID 305079
NCBI BioProject Accession PRJNA305079
NCBI Locus Tag
AT863  
NCBI BioSample Accession SAMN04324267
PI
Added By JGI automated process on 2016-06-28
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Model Organism
Sequencing Center Ningbo University (China)
Collaborating Institute
  
Funding Agency
  
Project Description
Algae-bacterial interactions were found to be important component as potential regulators in the sense of decreasing algal blooming. A bacterial YWL01 can attach to and cause lysis of Skeletonema costatum, which is one of the notorious bloom-forming diatoms. 16S rDNA sequence (1266 bp) of YWL01 shares highest similarity (97.63%) to Marinobacter adhaerens HP15, a newly identified strain, which showed specific attachment in viro to the surface of the diatom cells, Thalassiosira weissflogii and aggregate formation and thus generating marine snow particles. The 16S rRNA gene similarity was found to be below the threshold value (98.5%) for species characterization, and YWL01 shows algicidal character while HP15 not. Hence, YWL01 may be a novel species of genus Marinobacter.  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Marinobacter sp. YWL01 genome sequencing and Assembly
Organism Marinobacter sp. YWL01
Analysis Projects Marinobacter sp. YWL01
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0145008
Organism Name
Marinobacter sp. YWL01  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Marinobacter  
Genus Synonyms
  
Species
Marinobacter sp. YWL01  
Subspecies
  
Species Synonyms
  
Strain
YWL01  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1766722
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Alteromonadales  
NCBI Family
Alteromonadaceae  
NCBI Genus
Marinobacter  
NCBI Species
Marinobacter sp. YWL01  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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