PROJECT INFORMATION
GOLD Project ID
Gp0150620  
Project Name
Labrenzia aggregata CECT 4801  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Whole genome sequencing of Labrenzia aggregata CECT 4801
NCBI BioProject ID 297169
NCBI BioProject Accession PRJEB10003
NCBI Locus Tag
LAL4801  
NCBI BioSample Accession SAMEA3492688
PI
Added By JGI automated process on 2016-06-28
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Spanish Type Culture Collection (CECT) (Spain)
Collaborating Institute
  
Funding Agency
  
Project Description
Labrenzia aggregata is a member of the family Rhodobacteraceae reclassified in 2007 by Biebl et al. as a comb. nov. of Stappia aggregata (Uchino et al. 1998) sp. nov., nom.rev. of an isolate assigned to Agrobacterium genus by Ahrens et al in 1968. Genome sequencing of Labrenzia aggregata CECT 4801 was done using the Illumina Miseq system by the Central Service of Support to Experimental Research (SCSIE) of the University of Valencia (Spain).  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Whole genome sequencing of Labrenzia aggregata CECT 4801
Organism Labrenzia aggregata CECT 4801
Analysis Projects Labrenzia aggregata CECT 4801
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0144989
Organism Name
Labrenzia aggregata CECT 4801  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Labrenzia  
Genus Synonyms
  
Species
Labrenzia aggregata  
Subspecies
  
Species Synonyms
  
Strain
CECT 4801  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
CECT 4801  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 187304
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Rhodobacteraceae  
NCBI Genus
Labrenzia  
NCBI Species
Labrenzia aggregata  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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