PROJECT INFORMATION
GOLD Project ID
Gp0149861  
Project Name
Nocardia terpenica IFM 0406  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Nocardia terpenica IFM 0406 genome sequencing
NCBI BioProject ID 309225
NCBI BioProject Accession PRJNA309225
NCBI Locus Tag
AWN90  
NCBI BioSample Accession SAMN04426989
PI
Added By JGI automated process on 2016-06-28
Last Modified By Hema Katta on 2018-05-03
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Medical
Sequencing Center University of Tuebingen (Germany)
Collaborating Institute
  
Funding Agency
  
Project Description
N. terpenica IFM 0406 (formerly N. brasiliensis IFM 0406) is known to produce a suite of highly bioactive secondary metabolites, such as potent immunosuppressive compound brasilicardin. The N. terpenica sequencing project is carried out by the members of the ERA-IB 5 project NeBrasCa (2015-2017) which aims at the biotechnological development of brasilicardin as a novel immunosuppressive drug.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome announcements High-Quality Draft Genome Sequence of the Actinobacterium Nocardia terpenica IFM 0406, Producer of the Immunosuppressant Brasilicardins, Using Illumina and PacBio Technologies.
Other Publications
  
PROJECT COMPOSITION
Study Nocardia terpenica IFM 0406 genome sequencing
Organism Nocardia terpenica IFM 0406
Analysis Projects Nocardia terpenica IFM 0406
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Illumina HiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0144263
Organism Name
Nocardia terpenica IFM 0406  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Nocardia  
Genus Synonyms
  
Species
Nocardia terpenica  
Subspecies
  
Species Synonyms
  
Strain
IFM 0406  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
IFM 0406  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 455432
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Corynebacteriales  
NCBI Family
Nocardiaceae  
NCBI Genus
Nocardia  
NCBI Species
Nocardia terpenica  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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