PROJECT INFORMATION
GOLD Project ID
Gp0145946  
Project Name
Flavobacterium columnare 94-081  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Flavobacterium columnare strain:94-081
NCBI BioProject ID 308000
NCBI BioProject Accession PRJNA308000
NCBI Locus Tag
AWN65  
NCBI BioSample Accession SAMN04386100
PI
Added By JGI automated process on 2016-05-18
Last Modified By Hema Katta on 2018-01-19
Project Comments
  
Project Status
Complete and Published  
Project Relevance Agricultural
Sequencing Center Mississippi State University (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Flavobacterium columnare strain 94-081 was isolated from diseased channel catfish (Ictalurus punctatus) from a commercial aquaculture pond in Mississippi, United States. The high quality circular genome sequence of strain 94-081 will serve as a reference for genomovar II strains of F. columnare, which are important pathogens in catfish and other fish species.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome announcements Genome Sequence of the Fish Pathogen Flavobacterium columnare Genomovar II Strain 94-081.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Complete genome sequencing of Flavobacterium columnare genomovar II strain 94-081
Organism Flavobacterium columnare 94-081
Analysis Projects Flavobacterium columnare 94-081
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
PacBio RS
Illumina MiSeq
454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0140814
Organism Name
Flavobacterium columnare 94-081  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Flavobacterium  
Genus Synonyms
  
Species
Flavobacterium columnare  
Subspecies
  
Species Synonyms
  
Strain
94-081  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 996
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Flavobacteriia  
NCBI Order
Flavobacteriales  
NCBI Family
Flavobacteriaceae  
NCBI Genus
Flavobacterium  
NCBI Species
Flavobacterium columnare  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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