PROJECT INFORMATION
GOLD Project ID
Gp0144855  
Project Name
Bacteroides cellulosilyticus WH2  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Bacteroides cellulosilyticus
NCBI BioProject ID 289334
NCBI BioProject Accession PRJNA289334
NCBI Locus Tag
BcellWH2  
NCBI BioSample Accession SAMN03852682
PI
Added By JGI automated process on 2016-05-18
Last Modified By Supratim Mukherjee on 2016-05-18
Project Comments
  
Project Status
Complete and Published  
Project Relevance Medical
Sequencing Center Washington University in St. Louis (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Three Bacteroides species has been mono-cultured. DNA was extracted and sequenced with Pacbio and Illumina, and assembled.  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1292305
Experiment Title Whole genome sequencing of B. cellulosilyticus WH2 using the PacBio RSII platform
SRA Submission ID 1847428
Submitter Nathan P McNulty (nmcnulty@wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BcellWH2
Library Layout SINGLE
Library Instrument PacBio RS II
Spot Length 0
 
SRA Experiment Id SRX1295374
Experiment Title Whole genome sequencing of B. cellulosilyticus WH2 using the Illumina HiSeq 2000 platform
SRA Submission ID 1851454
Submitter Nathan P McNulty (nmcnulty@wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BcellWH2
Library Layout SINGLE
Library Instrument Illumina HiSeq 2000
Spot Length 38
PROJECT COMPOSITION
Study Fitness and diet responsiveness simultaneously defined in multiple Bacteroides strains in vivo
Organism Bacteroides cellulosilyticus WH2
Analysis Projects Bacteroides cellulosilyticus WH2
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Illumina MiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0139769
Organism Name
Bacteroides cellulosilyticus WH2  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Bacteroides  
Genus Synonyms
  
Species
Bacteroides cellulosilyticus  
Subspecies
  
Species Synonyms
  
Strain
WH2  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 246787
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Bacteroidia  
NCBI Order
Bacteroidales  
NCBI Family
Bacteroidaceae  
NCBI Genus
Bacteroides  
NCBI Species
Bacteroides cellulosilyticus  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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