PROJECT INFORMATION
GOLD Project ID
Gp0144828  
Project Name
Weissella viridescens NCDO 1655  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Plantaricin JK receptor
NCBI BioProject ID 303074
NCBI BioProject Accession PRJEB10916
NCBI Locus Tag
BN2742  
NCBI BioSample Accession SAMEA3546114
PI
Added By JGI automated process on 2016-05-18
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center University of Oslo (Norway)
Collaborating Institute
  
Funding Agency
  
Project Description
A putative membrane protein receptor of the two-peptide bacteriocin plantaricin JK was identified by comparing Illumina sequence reads from plantaricin JK-resistant mutants to a crude assembly of the sensitive wild-type Weissella viridescens genome using the polymorphism discovery tool VAAL. Ten resistant mutants harbored altogether seven independent mutations in a gene encoding an APC superfamily protein with 12 transmembrane helices. Three of the mutations lead to truncation of the encoded protein, while four mutations lead to amino acid residue changes in either transmembrane helix 10 or an extracellular domain between helix 11 and 12.  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Identifying the membrane receptor protein of plantaricin JK by whole genome sequencing of plantaricin JK-resistant mutants
Organism Weissella viridescens NCDO 1655
Analysis Projects Weissella viridescens NCDO 1655
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0139743
Organism Name
Weissella viridescens NCDO 1655  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Weissella  
Genus Synonyms
  
Species
Weissella viridescens  
Subspecies
  
Species Synonyms
  
Strain
NCDO 1655  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
NCDO 1655  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.5441  
Exemplar Name
Weissella viridescens  
Taxon DOI
10.1601/tx.5592  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1629
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Leuconostocaceae  
NCBI Genus
Weissella  
NCBI Species
Weissella viridescens  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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