PROJECT INFORMATION
GOLD Project ID
Gp0144624  
Project Name
Micrococcus luteus NDB3Y10  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Bacteria
NCBI BioProject ID 305084
NCBI BioProject Accession PRJNA305084
NCBI Locus Tag
AU359  
NCBI BioSample Accession SAMN04356940
PI
Added By JGI automated process on 2016-05-18
Last Modified By Hema Katta on 2018-07-02
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Griffith University (Australia)
Collaborating Institute
  
Funding Agency
  
Project Description
In an effort to discover novel bacterial species or novel ecotypes with potential bioremediation or biotechnological applications, bacteria were isolated from water/sediment samples taken from gas producing bore wells, some involved in coal seam gas (CSG) extraction activities. Genome sequencing of isolates using the WGS sequencing approach was conducted in an effort to elucidate functional profiles of novel isolates or identify novel functional properties of new ecotypes. This genome sequencing project is part of a larger research effort to better understand the involvement of microbial communities in the production of gas from these bore wells.  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome announcements Draft Genome Sequence of the 1,2-Dichloroethane-Utilizing sp. Strain NDB3Y10, Isolated from an Australian Bore Well Producing Coal Seam Gas.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Great Artesian Basin gas bore wells Genome sequencing and assembly
Organism Micrococcus luteus NDB3Y10
Analysis Projects Micrococcus luteus NDB3Y10
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0139543
Organism Name
Micrococcus luteus NDB3Y10  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Micrococcus  
Genus Synonyms
  
Species
Micrococcus luteus  
Subspecies
  
Species Synonyms
  
Strain
NDB3Y10  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1270
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Micrococcales  
NCBI Family
Micrococcaceae  
NCBI Genus
Micrococcus  
NCBI Species
Micrococcus luteus  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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